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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5575225_5575640_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5575225 - 5575640

Intron Length:

416

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAGGGGTC

5'SS Class:

major

3'SS Sequence:

TTCTGCTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

TTTTCTAAAACT

Flanking Amino Acid:

IVSKDRKTSPKSEFAGNEAQ

Intron Amino Acid Position:

284

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.1

69.4

35.5

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

0.72

0.8

73.4

37.2

Minor 5ss

34.1

-1.8

3.9

42.1

Minor BPS

64.6

0.54

1.9

88.67

36.3

Associated Gene:

Gene:

VPS11

Ensembl Gene ID:

ENSAPLG00000007732

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008060

5568969 - 5577548

8580