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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5575889_5575988_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5575889 - 5575988
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAAT
5'SS Class:
major
3'SS Sequence:
GTTTCCTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
AGCTCTAAAACC
Flanking Amino Acid:
LFVVTTENIQSYLLSVKDYP
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
76.8
33.7
Major BPS
73
0.57
1
73.6
28.6
Major PPT
79.4
0.66
0.8
74.3
30.9
Minor 5ss
28.3
-2.5
3.2
39
46.4
Minor BPS
47.6
-0.2
1.9
58.1
40.8

Associated Gene:

Gene:
VPS11
Ensembl Gene ID:
ENSAPLG00000007732
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008060
5568969 - 5577548
8580