Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5577086_5577380_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5577086 - 5577380

Intron Length:

295

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGCGGTG

5'SS Class:

major

3'SS Sequence:

TATCGAAGGGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGATCAA

U12 Branch Point Sequence:

TTTGCCTTAACT

Flanking Amino Acid:

SLVFGDIRGEIWFLPRSLQL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.9

0.28

1.2

54.8

44.4

Major BPS

63.9

0.34

1.2

40.9

Major PPT

53.5

0.08

1.2

43.7

Minor 5ss

31.5

-2.1

3.9

45.4

49.7

Minor BPS

89.4

1.31

1.1

100

28.8

Associated Gene:

Gene:

VPS11

Ensembl Gene ID:

ENSAPLG00000007732

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008060

5568969 - 5577548

8580