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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5583523_5583962_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5583523 - 5583962
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAA
U12 Branch Point Sequence:
TCAGTATCAACT
Flanking Amino Acid:
ETYLHRIGRSGRFGHLGLAI
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
61.3
0.28
1.3
66
40.9
Major PPT
84.9
0.78
0.9
90.5
22.3
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
47.8
-0
1.9
65.74
44.6

Associated Gene:

Gene:
DDX6
Ensembl Gene ID:
ENSAPLG00000007274
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007590
5583347 - 5592004
8658