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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5584065_5584944_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5584065 - 5584944
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTCACCTGAATT
Flanking Amino Acid:
NGLCRNLVCTDLFTRGIDIQ
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
77.5
0.68
1
79.6
33
Major PPT
83.5
0.75
0.8
76.8
36.8
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
68.5
0.66
1.5
81.72
39.9

Associated Gene:

Gene:
DDX6
Ensembl Gene ID:
ENSAPLG00000007274
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007590
5583347 - 5592004
8658