About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5586277_5586722_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5586277 - 5586722
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATCT
Flanking Amino Acid:
TFPLSVQKFMNSHLQKPYEI
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
79.3
28.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
87.5
0.84
0.7
84.9
29.5
Minor 5ss
31
-2.2
3.2
36.8
41.9
Minor BPS
73.5
0.82
1.5
87.51
38.5

Associated Gene:

Gene:
DDX6
Ensembl Gene ID:
ENSAPLG00000007274
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007590
5583347 - 5592004
8658