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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5587670_5587906_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5587670 - 5587906
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAGCA
5'SS Class:
major
3'SS Sequence:
TCTAACCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTCTTCTAACC
Flanking Amino Acid:
RDDIMRLDDTVHVVIATPGR
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
68.7
36.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77
0.61
0.9
69
36.7
Minor 5ss
26.1
-2.7
3
31.3
42.3
Minor BPS
56.3
0.18
1.7
67.77
37.9

Associated Gene:

Gene:
DDX6
Ensembl Gene ID:
ENSAPLG00000007274
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007590
5583347 - 5592004
8658