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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5588054_5588525_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5588054 - 5588525
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTTAACTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACACTTTTAACT
Flanking Amino Acid:
RLDLKKDNIQAMVIVPTREL
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
43.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.8
0.76
0.8
74.7
39.9
Minor 5ss
35
-1.7
2.7
41.5
44.9
Minor BPS
64.8
0.54
1.2
72.06
38.9

Associated Gene:

Gene:
DDX6
Ensembl Gene ID:
ENSAPLG00000007274
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007590
5583347 - 5592004
8658