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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5589870_5590351_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5589870 - 5590351
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGACG
5'SS Class:
strong_major
3'SS Sequence:
TGTGATTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CTTTTTGTGATT
Flanking Amino Acid:
PPKDLRIKTSDVTSTKGNEF
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.4
43.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
69.3
0.44
1
66.8
43.9
Minor 5ss
33.1
-1.9
3.1
42
44.3
Minor BPS
50.2
0.09
2
73.17
39

Associated Gene:

Gene:
DDX6
Ensembl Gene ID:
ENSAPLG00000007274
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007590
5583347 - 5592004
8658