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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5596583_5601401_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5596583 - 5601401

Intron Length:

4819

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAC

U12 Branch Point Sequence:

CCCCCTGTAACC

Flanking Amino Acid:

VSYSSETYDLSQAELSGYYE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

67.5

40.3

Major BPS

62.2

0.3

1.2

38.7

Major PPT

76.6

0.6

0.8

68.5

37.3

Minor 5ss

34.3

-1.8

2.8

37.3

42.5

Minor BPS

47.5

-0.2

54.7

44.1

Associated Gene:

Gene:

CXCR5

Ensembl Gene ID:

ENSAPLG00000000768

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000000743

5596544 - 5602478

5935