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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5617081_5618895_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5617081 - 5618895
Intron Length:
1815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGTGC
5'SS Class:
major
3'SS Sequence:
TGTCCTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTCCTTCCACA
Flanking Amino Acid:
STPSLDTESKGEVAPRSKRR
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.3
55.7
44.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78
0.63
0.8
72.3
32.4
Minor 5ss
41.2
-1
3.5
58.8
46.1
Minor BPS
49.2
-0
2
65.91
40.4

Associated Gene:

Gene:
BCL9L
Ensembl Gene ID:
ENSAPLG00000006957
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007221
5608827 - 5619259
10433