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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5668381_5668460_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5668381 - 5668460
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCGCG
5'SS Class:
major
3'SS Sequence:
TCCCGTCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCCTCCTCACCG
Flanking Amino Acid:
REALEKLQEEVAAAQEVLRD
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
56.7
42.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
66.9
0.38
0.8
61.4
29.1
Minor 5ss
29.8
-2.3
3.4
38
47.1
Minor BPS
47.8
-0.3
2
50.75
49.3

Associated Gene:

Gene:
CCDC84
Ensembl Gene ID:
ENSAPLG00000025403
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036629
5668264 - 5671509
3246