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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5668628_5668701_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5668628 - 5668701

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGGACC

5'SS Class:

major

3'SS Sequence:

GGCAGCCCCGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CGCTGAT

U12 Branch Point Sequence:

GCCCCGCTGATG

Flanking Amino Acid:

PQAGLLQHLAGPEHRRETAR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

64.5

38.4

Major BPS

63.8

0.34

1.2

54.7

43.1

Major PPT

56.2

0.14

46.7

36.5

Minor 5ss

31.7

-2.1

3.3

35.2

41.3

Minor BPS

-1

2.2

37.02

39.4

Associated Gene:

Gene:

CCDC84

Ensembl Gene ID:

ENSAPLG00000025403

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036629

5668264 - 5671509

3246