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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5669088_5669385_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5669088 - 5669385
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TATTTCTGACTC
Flanking Amino Acid:
AALSSTAAPPRDSSHNTEQP
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
86.2
0.81
0.7
84.1
23.9
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
55.4
0.15
1.7
67.88
37.9

Associated Gene:

Gene:
CCDC84
Ensembl Gene ID:
ENSAPLG00000025403
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036629
5668264 - 5671509
3246