Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5669492_5669896_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5669492 - 5669896

Intron Length:

405

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGGCT

5'SS Class:

major

3'SS Sequence:

TTTCTCATGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTCTCATGACA

Flanking Amino Acid:

SQALTFIGHQETEGKGNVHT

Intron Amino Acid Position:

229

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

67.1

35.3

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

0.61

73.4

35.8

Minor 5ss

-2.9

3.6

47.1

Minor BPS

62.4

0.38

1.6

76.83

33.2

Associated Gene:

Gene:

CCDC84

Ensembl Gene ID:

ENSAPLG00000025403

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036629

5668264 - 5671509

3246