Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5669928_5670339_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5669928 - 5670339

Intron Length:

412

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

CCCTGACTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAGAT

U12 Branch Point Sequence:

TTTTCCCTGACT

Flanking Amino Acid:

ETEGKGNVHTGAKPPWLTEE

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

82.3

32.2

Major BPS

74.1

0.6

38.9

Major PPT

67.8

0.4

0.9

37.5

Minor 5ss

40.5

-1.1

2.8

44.2

Minor BPS

78.6

0.98

1.6

96.61

28.1

Associated Gene:

Gene:

CCDC84

Ensembl Gene ID:

ENSAPLG00000025403

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036629

5668264 - 5671509

3246