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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5670430_5670524_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5670430 - 5670524
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TAAATTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTAAAAACT
Flanking Amino Acid:
GPSYEEFLRQKDKQKLKKLP
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
66
40.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.4
0.46
1
67.5
42.9
Minor 5ss
36
-1.6
2.9
43.3
38.2
Minor BPS
50.9
0.11
2.2
81.75
39.5

Associated Gene:

Gene:
CCDC84
Ensembl Gene ID:
ENSAPLG00000025403
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036629
5668264 - 5671509
3246