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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5670658_5671093_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5670658 - 5671093
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GCATCCTGACAT
Flanking Amino Acid:
VWNHGRRWQSRHQFRAESGE
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
83.4
0.75
0.8
80.7
31.3
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
48.4
-0
1.9
64.06
45.4

Associated Gene:

Gene:
CCDC84
Ensembl Gene ID:
ENSAPLG00000025403
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036629
5668264 - 5671509
3246