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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5677056_5677135_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5677056 - 5677135

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTC|GTGAGCCGC

5'SS Class:

weak_major

3'SS Sequence:

CCGTCCCCCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

CTGTCCCCATCC

Flanking Amino Acid:

EKLMLASMFHSLFAIGSQLS

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.4

0.17

1.3

46.7

43.6

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

64.2

0.32

0.8

58.2

26.8

Minor 5ss

34.3

-1.8

3.1

42.5

Minor BPS

45.7

-0.3

2.1

59.24

45.6

Associated Gene:

Gene:

TRAPPC4

Ensembl Gene ID:

ENSAPLG00000006876

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007128

5676325 - 5677935

1611