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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5677446_5677856_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5677446 - 5677856

Intron Length:

411

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

TTGAATATTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTGTTTTGAATA

Flanking Amino Acid:

NPFYSLEMPIRCELFDQNLK

Intron Amino Acid Position:

194

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.94

0.8

78.6

37.2

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

74.6

0.55

70.7

43.9

Minor 5ss

31.6

-2.1

3.1

38.7

46.6

Minor BPS

63.7

0.43

1.3

71.2

35.5

Associated Gene:

Gene:

TRAPPC4

Ensembl Gene ID:

ENSAPLG00000006876

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007128

5676325 - 5677935

1611