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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5680238_5681289_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5680238 - 5681289
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTCTGCT
5'SS Class:
weak_major
3'SS Sequence:
CTTGTTTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CATTTCTGATCT
Flanking Amino Acid:
ADLTGLKEHELWILTLGAVF
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.29
1.3
63.6
40.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.8
0.65
1
75.6
38.3
Minor 5ss
43.3
-0.7
2.9
60.2
44.2
Minor BPS
56
0.27
1.8
73.59
43.1

Associated Gene:

Gene:
SLC37A4
Ensembl Gene ID:
ENSAPLG00000006586
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006847
5678647 - 5685791
7145