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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5683727_5685212_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5683727 - 5685212
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCCTCCTGATCT
Flanking Amino Acid:
IEQGPKKGKKGSSSENSTLT
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
80.1
0.68
0.8
73
31.2
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
60.7
0.41
1.8
76.58
45.8

Associated Gene:

Gene:
SLC37A4
Ensembl Gene ID:
ENSAPLG00000006586
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006847
5678647 - 5685791
7145