About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5685457_5685612_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5685457 - 5685612
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGAAG
5'SS Class:
major
3'SS Sequence:
TTCTGTTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTTCTCAGACCT
Flanking Amino Acid:
VTFGVFCMAKWFEPSQFGTW
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
62.9
43.2
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
75.8
0.58
0.9
71.4
38.4
Minor 5ss
29.6
-2.3
3.4
38.2
47
Minor BPS
48
-0
2
75.17
41.1

Associated Gene:

Gene:
SLC37A4
Ensembl Gene ID:
ENSAPLG00000006586
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006847
5678647 - 5685791
7145