Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5694896_5695327_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5694896 - 5695327

Intron Length:

432

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAATGGG

5'SS Class:

major

3'SS Sequence:

TCCCTCCCCATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCAAAA

U12 Branch Point Sequence:

ACATCCAAAAAG

Flanking Amino Acid:

TLEKAINETMMWKNETLAEQ

Intron Amino Acid Position:

880

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

62.2

42.6

Major BPS

55.5

0.14

61.5

32.5

Major PPT

70.3

0.46

0.7

64.8

Minor 5ss

31.6

-2.1

3.2

37.3

42.5

Minor BPS

44.6

-0.5

49.01

Associated Gene:

Gene:

HYOU1

Ensembl Gene ID:

ENSAPLG00000006043

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006310

5693275 - 5706722

13448