Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5697087_5697396_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5697087 - 5697396

Intron Length:

310

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTATGTTTT

5'SS Class:

weak_major

3'SS Sequence:

GTTCACATTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

ATACCTTTGATC

Flanking Amino Acid:

LEDELKSSMKKLQDLTVRDL

Intron Amino Acid Position:

736

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

0.9

83.3

29.1

Major BPS

78.2

0.7

77.9

32.1

Major PPT

69.4

0.44

0.9

59.6

41.3

Minor 5ss

63.8

0.47

2.2

75.6

33.8

Minor BPS

0.36

1.2

65.88

33.3

Associated Gene:

Gene:

HYOU1

Ensembl Gene ID:

ENSAPLG00000006043

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006310

5693275 - 5706722

13448