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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5697597_5698022_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5697597 - 5698022
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAAAT
U12 Branch Point Sequence:
CTTGGCTGAAAT
Flanking Amino Acid:
KEEGEKVESQDPKENKETTK
Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
54.8
0.12
1.3
62.7
40.5
Major PPT
81.8
0.72
0.9
76
38
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
48.1
-0
2.1
69.82
46.7

Associated Gene:

Gene:
HYOU1
Ensembl Gene ID:
ENSAPLG00000006043
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006310
5693275 - 5706722
13448