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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5699715_5699947_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5699715 - 5699947
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTATCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
TTGTCTATCACC
Flanking Amino Acid:
DLSFLNQDDLRIFGSLNLTT
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.4
36.8
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
71.3
0.48
1
63.8
41.8
Minor 5ss
34.6
-1.8
2.8
40.9
45.4
Minor BPS
53.5
0.09
2
70.81
40.9

Associated Gene:

Gene:
HYOU1
Ensembl Gene ID:
ENSAPLG00000006043
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006310
5693275 - 5706722
13448