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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5700603_5700698_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5700603 - 5700698
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGCTTTTCACT
Flanking Amino Acid:
VQEVLLKAVGKEELGKNINA
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.9
0.63
0.8
73.5
31
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
57.5
0.32
1.7
76.33
40.8

Associated Gene:

Gene:
HYOU1
Ensembl Gene ID:
ENSAPLG00000006043
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006310
5693275 - 5706722
13448