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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5704002_5704586_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5704002 - 5704586
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGAAGG
5'SS Class:
major
3'SS Sequence:
CCATCTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
ACTTCTTCCACC
Flanking Amino Acid:
YSRGLAEEFAEQPIKDAVIT
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
58.5
46.1
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
79.7
0.67
0.8
76.7
31.7
Minor 5ss
27.8
-2.5
2.9
32.1
42
Minor BPS
50.6
-0
2
64.51
41.5

Associated Gene:

Gene:
HYOU1
Ensembl Gene ID:
ENSAPLG00000006043
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006310
5693275 - 5706722
13448