About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5704664_5704765_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5704664 - 5704765
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GTTGTTGTAACT
Flanking Amino Acid:
KRQTVIFKLSQTVQYSPEEM
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
34.9
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
88.5
0.87
0.6
85
22.7
Minor 5ss
35.2
-1.7
3.3
49.1
41.3
Minor BPS
52.6
0.16
2.1
75.46
41.9

Associated Gene:

Gene:
HYOU1
Ensembl Gene ID:
ENSAPLG00000006043
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006310
5693275 - 5706722
13448