Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5709065_5709155_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5709065 - 5709155

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGCAAA

5'SS Class:

major

3'SS Sequence:

TCTGTGCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGAGCAC

U12 Branch Point Sequence:

GTCCCCGAACCA

Flanking Amino Acid:

AEKSRLMESREREMELRRQA

Intron Amino Acid Position:

1133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

70.2

37.7

Major BPS

45.3

-0.2

1.4

51.4

43.9

Major PPT

76.6

0.6

0.9

69.6

36.8

Minor 5ss

32.8

-2

2.8

31.2

42.7

Minor BPS

40.5

-0.7

2.4

52.93

45.2

Associated Gene:

Gene:

PHLDB1

Ensembl Gene ID:

ENSAPLG00000005721

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005911

5707139 - 5727739

20601

ENSAPLT00000005910

5707139 - 5727739

20601

ENSAPLT00000020586

5707139 - 5727739

20601

ENSAPLT00000005912

5707139 - 5727739

20601