About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5709247_5709826_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5709247 - 5709826
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCTG
5'SS Class:
major
3'SS Sequence:
GCTCCTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAC
U12 Branch Point Sequence:
GCCCAGGTGACG
Flanking Amino Acid:
NSACSPDNMSSTSGMDAGKI
Intron Amino Acid Position:
1102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
65.5
45.9
Major BPS
48.9
-0
1.3
40.5
41.4
Major PPT
79.3
0.66
0.8
72.7
32
Minor 5ss
41.6
-0.9
3.1
56.4
47.8
Minor BPS
33.1
-1.4
2.4
33.26
40.5

Associated Gene:

Gene:
PHLDB1
Ensembl Gene ID:
ENSAPLG00000005721
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005911
5707139 - 5727739
20601
ENSAPLT00000005910
5707139 - 5727739
20601
ENSAPLT00000020586
5707139 - 5727739
20601
ENSAPLT00000005912
5707139 - 5727739
20601