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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5726962_5727080_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5726962 - 5727080
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
GAGCGCTCAGCC
Flanking Amino Acid:
TAITLLPLEEGRTTIGTAAK
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
76.4
0.59
0.9
73
31.8
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
41
-0.7
2
46.49
41.9

Associated Gene:

Gene:
PHLDB1
Ensembl Gene ID:
ENSAPLG00000005721
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005911
5707139 - 5727739
20601
ENSAPLT00000005910
5707139 - 5727739
20601
ENSAPLT00000020586
5707139 - 5727739
20601
ENSAPLT00000005912
5707139 - 5727739
20601