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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5735506_5736206_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5735506 - 5736206

Intron Length:

701

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTGTGTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGAGAT

U12 Branch Point Sequence:

TAGGACTTGAGA

Flanking Amino Acid:

KVLAPPINMESVHMKIEEKI

Intron Amino Acid Position:

276

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.94

0.9

90.9

28.7

Major BPS

0.35

1.3

60.7

45.9

Major PPT

83.7

0.76

0.9

76.9

42.1

Minor 5ss

40.3

-1.1

3.2

59.2

45.4

Minor BPS

46.8

-0.2

1.9

55.82

43.3

Associated Gene:

Gene:

ARCN1

Ensembl Gene ID:

ENSAPLG00000005425

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005597

5732805 - 5738558

5754