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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5736369_5736868_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5736369 - 5736868
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GCGTTGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
GTGACTTGAATA
Flanking Amino Acid:
EKPKVAPAPSRPSGPSKALK
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
64
0.32
1
61.5
44.5
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
54.9
0.15
1.5
61.67
38.6

Associated Gene:

Gene:
ARCN1
Ensembl Gene ID:
ENSAPLG00000005425
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005597
5732805 - 5738558
5754