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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5737075_5737311_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5737075 - 5737311
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTGTCTTTTACT
Flanking Amino Acid:
EEKVFRAVRETQEREAKAEM
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
74.2
0.6
1
67
39.4
Major PPT
87.5
0.84
0.7
85.8
27.1
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
73.5
0.82
1.6
87.77
37.8

Associated Gene:

Gene:
ARCN1
Ensembl Gene ID:
ENSAPLG00000005425
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005597
5732805 - 5738558
5754