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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5737492_5738216_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5737492 - 5738216
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCAAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTCCCAAATT
Flanking Amino Acid:
LETLRLFSRVIPEYCRALEE
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
78.7
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
61.5
0.26
0.9
60.8
34
Minor 5ss
37
-1.5
3.3
48.9
41.6
Minor BPS
58.1
0.33
2
80.27
42.1

Associated Gene:

Gene:
ARCN1
Ensembl Gene ID:
ENSAPLG00000005425
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005597
5732805 - 5738558
5754