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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5740403_5740592_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5740403 - 5740592
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCCTA
5'SS Class:
major
3'SS Sequence:
TTTCTCCCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTGCCTGAACG
Flanking Amino Acid:
DSEEHGAPPDGDYNLAEYDY
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65
42.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.8
0.76
0.6
82.3
22.4
Minor 5ss
35.6
-1.6
3.1
39.2
46.1
Minor BPS
70.7
0.51
1.6
76.42
41

Associated Gene:

Gene:
IFT46
Ensembl Gene ID:
ENSAPLG00000005573
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005770
5740016 - 5743488
3473