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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5740668_5740774_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5740668 - 5740774
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAC
U12 Branch Point Sequence:
CACTGTGTAACA
Flanking Amino Acid:
EIKELFEYIRRYTPKMINIE
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
56.8
0.17
1.4
61.4
43.2
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
44.8
-0.3
2.3
55.29
44.3

Associated Gene:

Gene:
IFT46
Ensembl Gene ID:
ENSAPLG00000005573
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005770
5740016 - 5743488
3473