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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5740869_5741292_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5740869 - 5741292
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
CTGTGTTTACCT
Flanking Amino Acid:
AVGDIDAFLKVPRPDGKPDN
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
75.8
36.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
81
0.7
0.8
74.1
35.7
Minor 5ss
37.3
-1.4
3.6
55.1
49.1
Minor BPS
50.4
0.09
2.1
70.68
46.8

Associated Gene:

Gene:
IFT46
Ensembl Gene ID:
ENSAPLG00000005573
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005770
5740016 - 5743488
3473