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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5741422_5741717_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5741422 - 5741717
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCAT
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ACTTCCAGATTT
Flanking Amino Acid:
TENSKQHNITQQIKVKSVEN
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
68.1
38.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
32.6
-2
3
46.8
42.6
Minor BPS
47.6
-0.1
2
68.26
42.7

Associated Gene:

Gene:
IFT46
Ensembl Gene ID:
ENSAPLG00000005573
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005770
5740016 - 5743488
3473