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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5742667_5742981_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5742667 - 5742981

Intron Length:

315

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

GCTCTTCTTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

CTCTCATGCACT

Flanking Amino Acid:

DLAEYVDMICAILDIPVYKS

Intron Amino Acid Position:

286

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

69.3

43.2

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

79.3

0.66

0.8

77.1

31.6

Minor 5ss

39.2

-1.2

2.9

49.5

46.5

Minor BPS

47.5

-0.1

2.2

69.74

46.7

Associated Gene:

Gene:

IFT46

Ensembl Gene ID:

ENSAPLG00000005573

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005770

5740016 - 5743488

3473