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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5743068_5743392_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5743068 - 5743392

Intron Length:

325

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAAC

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTCAT

U12 Branch Point Sequence:

TTTGCACTAACG

Flanking Amino Acid:

SLYSEFKNSQHFKPMAEGKK

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

81.4

32.7

Major BPS

77.2

0.67

1.2

79.6

35.6

Major PPT

86.5

0.82

0.7

81.2

23.9

Minor 5ss

39.7

-1.2

2.9

51.2

45.7

Minor BPS

53.6

-0

2.1

69.51

43.4

Associated Gene:

Gene:

IFT46

Ensembl Gene ID:

ENSAPLG00000005573

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005770

5740016 - 5743488

3473