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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5746377_5746546_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5746377 - 5746546
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGGCCT
5'SS Class:
major
3'SS Sequence:
GTTTGCTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
TCCTGCCTCACT
Flanking Amino Acid:
ANASVLLDVQYKPEILRADA
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
60
44.5
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
70
0.45
1
61.6
44.5
Minor 5ss
35.4
-1.7
3.5
49.8
46
Minor BPS
45.7
-0.2
2.4
67.94
48.6

Associated Gene:

Gene:
TMEM25
Ensembl Gene ID:
ENSAPLG00000005570
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005750
5745174 - 5747396
2223