About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5754382_5754745_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5754382 - 5754745
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAAAT
Flanking Amino Acid:
KTSKEAVGVYRSPIHGRGLF
Intron Amino Acid Position:
3648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.6
0.67
0.8
77.4
36.9
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
67.7
0.64
1.5
85.71
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004837
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005072
5753545 - 5793245
39701