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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5754830_5755339_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5754830 - 5755339
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
CTCTCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
ACGTCATCACTT
Flanking Amino Acid:
EEEEVQLKSARRATSMDLPM
Intron Amino Acid Position:
3620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
69.2
41.7
Major BPS
62
0.3
1
62.3
30.4
Major PPT
76.2
0.59
0.8
68.7
37.2
Minor 5ss
42.7
-0.8
2.5
54.7
42.7
Minor BPS
44.6
-0.3
2
59.44
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004837
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005072
5753545 - 5793245
39701