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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5756026_5756343_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5756026 - 5756343
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATCC
5'SS Class:
major
3'SS Sequence:
TTTCATGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTGCTCTATTT
Flanking Amino Acid:
NARLKQLSFAGVNGLRMLGI
Intron Amino Acid Position:
3526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
69.5
36.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.6
0.71
0.9
73.1
41.8
Minor 5ss
44.7
-0.6
2.8
60.7
43.8
Minor BPS
47.6
-0.1
2
68.9
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004837
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005072
5753545 - 5793245
39701