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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5756419_5757041_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5756419 - 5757041
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTAACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTTGTGTAACT
Flanking Amino Acid:
GFQICAESIEDAWKSLTDKV
Intron Amino Acid Position:
3501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
77.7
0.69
1
81
30.2
Major PPT
71.6
0.49
1
63.9
41.8
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
59
0.36
2.4
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004837
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005072
5753545 - 5793245
39701