About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5758535_5759889_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5758535 - 5759889
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATGTTCCTAACT
Flanking Amino Acid:
AVAVPQVSATRTPAVKADVQ
Intron Amino Acid Position:
3395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
33.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
89.1
0.88
0.7
81.2
36.5
Minor 5ss
30.2
-2.3
3.3
39
46.2
Minor BPS
67.3
0.62
1.7
82.79
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004837
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005072
5753545 - 5793245
39701