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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5768304_5768811_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5768304 - 5768811
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCGTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TGACAGCTGACT
Flanking Amino Acid:
RFWEPNKVTSNSGMLPNAVL
Intron Amino Acid Position:
1579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
77.4
0.62
1
73.1
42.1
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
40.6
-0.6
2.4
60.55
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004837
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005072
5753545 - 5793245
39701